WashU Epigenome Browser
stable

Contents:

  • Use the Browser
  • Tracks
  • Datahub
  • Installation
  • Embedding
  • Frontend code architeture
  • Contact us
WashU Epigenome Browser
  • Docs »
  • WashU Epigenome Browser
  • Edit on GitHub

WashU Epigenome Browser¶

_images/eg.png

Gateway to the epigenome. (Art by Ting Wang)

Contents:

  • Use the Browser
    • The Top Menu
    • Genomic Region Locator
    • Operations in the Tracks View Container
    • Settings
    • Apps
    • Track management
    • Track Customization
    • Circlet view for chromatin interaction tracks
  • Tracks
    • Configure your webserver to enable CORS
    • Prepare track files
    • Annotation Tracks
    • Numerical Tracks
    • Read Alignment BAM Tracks
    • Methylation tracks
    • Categorical tracks
    • Long range chromatin interaction
  • Datahub
    • Example data hub
    • Example bigWig track
    • Example methylC track
    • Example categorical track
    • Example longrange track
    • Example bigInteract track
    • Example repeatmasker track
    • Example geneAnnotation track
    • Example bigbed track
    • Example bed track
    • Example refbed track
    • Example HiC track
    • Example cool track
    • Example genomealign track
    • Example Ruler track
    • Track properties
  • Installation
    • Setup
    • Start the browser
    • Setup your own backend API (optional)
  • Embedding
  • Frontend code architeture
    • Quick tour
    • Suggested order of reading
    • Making a new track type
    • Performance tips
    • React (and other) gotchas
    • Lessons trying to refactor into WebWorkers
  • Contact us
    • Source code and issue tracker
    • Get help on social media

Indices and tables¶

  • Index
  • Search Page
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© Copyright 2018, Daofeng Li, Silas Hsu, Renee L. Sears and Ting Wang Revision 7c989025.

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